Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
STAD rs59619769 chr3:117726025 GT/G 1.04E-7 403 1.93 17.92 13.97 KM Plot
STAD rs59859849 chr1:227391709 A/G 0 405 14.27 14.45 1.48 KM Plot
STAD rs60235610 chr1:227415273 G/C 0 404 14.27 14.23 1.48 KM Plot
STAD rs60238989 chr1:227270982 A/T 0 404 14.37 14.23 1.48 KM Plot
STAD rs60291100 chr1:227292400 C/A 0 405 14.37 14.15 1.48 KM Plot
STAD rs6045411 chr20:18433858 A/G 1.55E-6 406 14.27 15.58 9.63 KM Plot
STAD rs60641481 chr1:227312564 G/T 0 405 14.37 14.15 1.48 KM Plot
STAD rs607704 chr17:28919503 A/G 1.66E-5 403 14.2 16.53 9.8 KM Plot
STAD rs609472 chr17:28951427 T/C 1.4E-5 401 14.23 16.02 9.8 KM Plot
STAD rs60979561 chr1:227254068 T/C 0 406 14.27 14.23 1.48 KM Plot
STAD rs61493516 chr17:29019318 T/G 1.49E-5 405 14.2 16.53 9.8 KM Plot
STAD rs61778546 chr1:40687368 T/C 8.33E-9 391 14.93 12.63 3.13 KM Plot
STAD rs62330018 chr5:309691 C/T 3.9E-7 401 14.07 19.8 3.53 KM Plot
STAD rs6428385 chr1:197048391 C/T 5.24E-7 406 5.8 17.77 14.07 KM Plot
STAD rs6428387 chr1:197061557 A/G 1.62E-7 406 4.02 17.43 14.07 KM Plot